virtual-cell

Awesome-AI-Virtual-Cell: papers, datasets, benchmarks, talks, and community resources for AIVC

[ICLR 2026] scDFM: Distributional Flow Matching for Robust Single-Cell Perturbation Prediction

PULSAR: a Foundation Model for Multi-scale and Multicellular Biology

Single cell foundation model with federated tabular learning

GCModeller: genomics CAD(Computer Assistant Design) Modeller system in .NET language

Code for "Foundation Models Improve Perturbation Response Prediction"

Decoding Single-Cell Omics of Perturbation Responses Using DeSCOPE

Generative modeling of spatially resolved perturbation responses with CONCERT

State-of-the-art bio cell models for inference and training. Minimal, readable, and produciton-ready.

A Simple Atlas Transfer Method · Top 100 on the Public Leaderboard (#82) · Score: 0.1545618019 · September 10, 2026

[ICML'26] SPATIA: Multimodal Generation and Prediction of Spatial Cell Phenotypes

VCDesign: Finite-Budget Intervention Design for Virtual Cells

A hands-on virtual cell perturbation prediction course for experimental biologists.

Efficient and diverse virtual cell priors in JAX for end-to-end pretraining

Accepted at the NeurIPS 2026 Workshop ML4Molecules: Do Perturbation Predictors Learn Gene Interactions? Diagnosing Extrapolation in Agentic Screening

Measurement resolution for fine-grained perturbation prediction

Official repository for FreeBridge - MICCAI 2026 (Early Accept)

Official Implementation of SubcellPert: Benchmarking Subcellular Perturbation Prediction

Store and analyze scRNAseq data with extreme memory efficiency.

A cell has a normal gene-activity pattern. Knock out one gene and that pattern changes. This project trains a small model to guess the new pattern from (1) the normal pattern and (2) a numeric fingerprint of the knocked-out gene.