[Configuration] Skip deprecated rules from active set, warn only instead of crashing

[TomasVotruba]

Fixes rectorphp/rector#9859

Problem

A registered deprecated rule crashes Rector with exit code 1 instead of printing a warning only.

Every DeprecatedInterface rule has a gutted refactor() that throws:

// rules/Transform/Rector/Class_/AddInterfaceByTraitRector.php
public function refactor(Node $node): ?Node
{
    throw new ShouldNotHappenException(sprintf(
        '"%s" rule is deprecated, as too niche; ...', self::class
    ));
}

DeprecatedRulesReporter prints the deprecation as a non-blocking warning, but the rule was still registered and run. As soon as it matched a node (AddInterfaceByTraitRector subscribes to every Class_), the throw fired and was caught as a SystemError -> exit code 1.

All 43 deprecated rules share this pattern, so any registered deprecated rule breaks the run.

Fix

ConfigurationRuleFilter::filter() now drops DeprecatedInterface rules from the active set unconditionally. They still warn via DeprecatedRulesReporter, but never run, so the throw guard is never reached.

Before

[WARNING] Registered rule "...AddInterfaceByTraitRector" is deprecated ...

[ERROR] "...AddInterfaceByTraitRector" rule is deprecated, as too niche; ...
        (exit code 1)

After

[WARNING] Registered rule "...AddInterfaceByTraitRector" is deprecated ...
        (exit code 0)