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Hamada Laboratory

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  1. raptgen raptgen Public

    Forked from Xilorole/raptgen

    Python 32 7

  2. ARG-BERT ARG-BERT Public

    Python 12

  3. REPrise REPrise Public

    REPrise is de novo interspersed repeat detection software.

    C++ 10 1

  4. RaptRanker RaptRanker Public

    C++ 8 1

  5. DeepRaccess DeepRaccess Public

    Forked from kaisei-h/DeepRaccess

    Jupyter Notebook 4 2

  6. RaptScore RaptScore Public

    The code for "RaptScore: a large language model-based algorithm for versatile aptamer evaluation"

    Python 3 2

Repositories

Showing 10 of 24 repositories
  • RaptGFN Public

    Training and generation for preference-conditioned RNA aptamer candidate design

    hmdlab/RaptGFN's past year of commit activity
    Python 0 MIT 0 0 0 Updated Oct 4, 2026
  • DExOmics Public

    Interpreting differential gene expression in cancer through AI-guided analysis of multi-omics data

    hmdlab/DExOmics's past year of commit activity
    Python 0 MIT 0 0 0 Updated Sep 18, 2026
  • utr_pairpred Public

    Repository for the article`Deciphering the comprehensive relationship between 5'UTR and 3'UTR sequences with deep learning

    hmdlab/utr_pairpred's past year of commit activity
    Python 0 MIT 1 0 0 Updated Aug 24, 2026
  • OddSketch-Genome Public

    OddSketch-Genome: a standalone CLI and reproducible benchmark workflow for genome Jaccard similarity estimation.

    hmdlab/OddSketch-Genome's past year of commit activity
    Python 1 MIT 0 0 0 Updated Aug 20, 2026
  • RaptQA Public

    RaptQA: reproducible HT-SELEX RNA aptamer design with multi-temperature RBMs, QUBO export, and annealing workflows.

    hmdlab/RaptQA's past year of commit activity
    Python 1 MPL-2.0 0 0 2 Updated Aug 12, 2026
  • BWR-finder Public

    De novo repeat detection tools for gigantic genomes

    hmdlab/BWR-finder's past year of commit activity
    C++ 1 GPL-3.0 2 0 0 Updated Aug 3, 2026
  • molearnA Public
    hmdlab/molearnA's past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Mar 12, 2026
  • RaptGen-UI Public

    Web UI of RaptGen developed with React and FastAPI

    hmdlab/RaptGen-UI's past year of commit activity
    TypeScript 1 MIT 0 0 0 Updated Jan 31, 2026
  • RaptEvo Public
    hmdlab/RaptEvo's past year of commit activity
    Python 1 MIT 1 0 0 Updated Jan 3, 2026
  • RaptScore Public

    The code for "RaptScore: a large language model-based algorithm for versatile aptamer evaluation"

    hmdlab/RaptScore's past year of commit activity
    Python 3 2 0 0 Updated Dec 5, 2025
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