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  1. Biomedical-Imaging-Group/DeconvolutionLab2 Biomedical-Imaging-Group/DeconvolutionLab2 Public

    Java (ImageJ/Fiji) software package for 3D deconvolution microscopy

    Java 70 15

  2. Biomedical-Imaging-Group/OrientationJ Biomedical-Imaging-Group/OrientationJ Public

    Measure the orientation of fibers and structures in 2D images — ImageJ/Fiji plugins based on the gradient structure tensor, with docs, theory, assessment, and test images.

    Java 32 9

  3. SMLM-Challenge/Challenge2016 SMLM-Challenge/Challenge2016 Public

    Single-Molecule Localization Microscopy - Software Benchmarking - Challenge 2016

    MATLAB 19 9

  4. Biomedical-Imaging-Group/EDF-Extended-Depth-of-Field Biomedical-Imaging-Group/EDF-Extended-Depth-of-Field Public

    An ImageJ plugin for stack focusing. Implementation of several algorithms form max-variance to max-wavelets.

    Java 21 5