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Allow a list of equilibration times, one for each lambda window - #265
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Adds support for passing a list of times to
equilibration_time, one for each λ window, so that windows can be equilibrated for different amounts, e.g.A single time is still used for every window, so existing configs and command lines are unchanged. Windows with a time of zero are not equilibrated, and the number of values must match the number of λ windows.
In replica exchange, zero-time replicas are still moved in and out of their shared contexts so that slots are rebuilt as before. Production constraints are the same in both runners for every window.