Clean up open security PRs and resolve CVEs

[inFocus7]

We should clean up the number of PRs -- namely the security-related nones -- by closing the automated Snyk pulls. Below I have compiled a list of the PRs that can be left opened (and merged), should be closed (duplicates), and those that require more investigation.

After these merge, we should do a final CVE check to see if any lingering, resolvable CVEs exist.

---

Can be kept... (5 + 1)

• [Snyk] Security upgrade @azure/identity from 4.10.2 to 4.13.1 #79
• [Snyk] Upgrade @modelcontextprotocol/sdk from 1.12.1 to 1.25.3 #62
• [Snyk] Upgrade express from 5.1.0 to 5.2.1 #59
• [Snyk] Upgrade puppeteer from 24.4.0 to 24.36.1 #63
• [Snyk] Security upgrade axios from 1.8.4 to 1.16.0 #86
  • Note: Here because there was no automated message w.r.t. it containing breaking changes, but should be investigated.
• Note: We should create a PR to bump js-yaml: 4.1.0 -> 4.3.1. This was done in some PRs (e.g. [Snyk] Fix for 1 vulnerabilities #105), but those also had bumps to puppeteer which is already handled above to a newer version.

Can be closed... (19)

• [Snyk] Upgrade @azure/identity from 4.10.2 to 4.13.0 #57
• [Snyk] Upgrade @modelcontextprotocol/sdk from 1.12.1 to 1.25.3 #58
• [Snyk] Security upgrade puppeteer from 24.4.0 to 24.15.0 #64
• [Snyk] Security upgrade puppeteer from 24.4.0 to 24.15.0 #74
• [Snyk] Security upgrade puppeteer from 24.4.0 to 24.15.0 #76
• [Snyk] Security upgrade puppeteer from 24.4.0 to 24.15.0 #81
• [Snyk] Security upgrade puppeteer from 24.4.0 to 24.15.0 #83
• [Snyk] Security upgrade puppeteer from 24.4.0 to 24.15.0 #104
• [Snyk] Fix for 4 vulnerabilities #69
  • @qdrant/js-client-rest: 1.13.0 -> 1.14.1
  • @qdrant/qdrant-js: 1.13.0 -> 1.14.1
• [Snyk] Fix for 3 vulnerabilities #89
  • @qdrant/js-client-rest: 1.13.0 -> 1.14.1
  • @qdrant/qdrant-js: 1.13.0 -> 1.14.1
• [Snyk] Fix for 1 vulnerabilities #105
  • js-yaml: 4.1.0 -> 4.3.1
  • puppeteer: 24.1.1 -> 24.15.0
• [Snyk] Fix for 1 vulnerabilities #93
  • js-yaml: 4.1.0 -> 4.3.0
  • puppeteer: 24.1.1 -> 24.15.0
• [Snyk] Fix for 2 vulnerabilities #88
  • js-yaml: 4.1.0 -> 4.2.0
  • puppeteer: 24.1.1 -> 24.15.0
• [Snyk] Fix for 2 vulnerabilities #71
  • axios: 1.6.2 -> 1.13.2
  • puppeteer: 24.1.1 -> 24.15.0
• [Snyk] Security upgrade axios from 1.8.4 to 1.15.0 #72
• [Snyk] Security upgrade axios from 1.8.4 to 1.15.0 #73
• [Snyk] Security upgrade axios from 1.8.4 to 1.15.2 #78
• [Snyk] Security upgrade axios from 1.8.4 to 1.15.2 #80
• [Snyk] Security upgrade axios from 1.8.4 to 1.16.0 #85

Ideal // Investigation Needed (2)

Here due to breaking changes requiring more investigation...
These would be the ideal versions, as opposed to above, but there were notes in the PRs regarding breaking changes requiring more investigation.

• [Snyk] Security upgrade puppeteer from 24.4.0 to 25.0.2 #90
• [Snyk] Security upgrade axios from 1.8.4 to 1.18.0 #97